![]() Kraken2 -db NematodeViral -threads 16 -report 04_DownloadedRNAseq/ERR202487_2.fastq.gz.report -gzip-compressed -unclassified-out 04_DownloadedRNAseq/ERR202487_2.fastqunclassified#.fq -classified-out 04_DownloadedRNAseq/ERR202487_2.fastqclassified#.fq -paired 04_DownloadedRNAseq/ERR202487_1.fastq.gz 04_DownloadedRNAseq/ERR202487_2.fastq.gz > 04_DownloadedRNAseq/ERR202487_2. Kraken2 -db NematodeViral -threads 16 -report 04_DownloadedRNAseq/DRR141214_2.fastq.gz.report -gzip-compressed -unclassified-out 04_DownloadedRNAseq/DRR141214_2.fastqunclassified#.fq -classified-out 04_DownloadedRNAseq/DRR141214_2.fastqclassified#.fq -paired 04_DownloadedRNAseq/DRR141214_1.fastq.gz 04_DownloadedRNAseq/DRR141214_2.fastq.gz > 04_DownloadedRNAseq/DRR141214_2. #this just adds the taxids to the fasta headers, but does not affect sequenceÄĞioawk -c fastx '' >kraken.sh
0 Comments
Leave a Reply. |
AuthorWrite something about yourself. No need to be fancy, just an overview. ArchivesCategories |